Package: robber 0.2.4

robber: Using Block Model to Estimate the Robustness of Ecological Network

Implementation of a variety of methods to compute the robustness of ecological interaction networks with binary interactions as described in <doi:10.1002/env.2709>. In particular, using the Stochastic Block Model and its bipartite counterpart, the Latent Block Model to put a parametric model on the network, allows the comparison of the robustness of networks differing in species richness and number of interactions. It also deals with networks that are partially sampled and/or with missing values.

Authors:Saint-Clair Chabert-Liddell [aut, cre]

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NEWS

# Install 'robber' in R:
install.packages('robber', repos = c('https://chabert-liddell.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/chabert-liddell/robber/issues

Datasets:

On CRAN:

Conda:

ecological-networkrobberrobustness

3.70 score 1 stars 4 scripts 143 downloads 9 exports 125 dependencies

Last updated 1 years agofrom:71d9368f2d. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKApr 02 2025
R-4.5-winOKApr 02 2025
R-4.5-macOKApr 02 2025
R-4.5-linuxOKApr 02 2025
R-4.4-winOKApr 02 2025
R-4.4-macOKApr 02 2025
R-4.4-linuxOKApr 02 2025
R-4.3-winOKApr 02 2025
R-4.3-macOKApr 02 2025

Exports:%>%auc_robustness_lbmcompare_robustnessget_lbm_paramrobustness_emprobustness_lbmsimulate_lbmvar_auc_unif_lbmvar_fun_unif_lbm

Dependencies:aricodebackportsbase64encblockmodelsbslibcachemcheckmatecliclustercmprskcodetoolscolorspacecpp11data.tablediagramdigestdoParalleldplyrevaluatefansifarverfastmapfontawesomeforeachforeignFormulafsfuturefuture.applygenericsggplot2globalsgluegmpGREMLINSgridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsigraphisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglatticelavalazyevallifecyclelistenvmagrittrMASSmathjaxrMatrixMatrixModelsmemoisemetsmgcvmimemultcompmunsellmvtnormnlmennetnumDerivpammtoolsparallellypartitionspbmcapplypecpillarpkgconfigplotrixpolsplinepolynomprodlimprogressrPublishpurrrquantregR6rangerrappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackriskRegressionrlangrmarkdownrmsrpartrstudioapisandwichsassscalesscamsetsshapeSparseMSQUAREMstringistringrsurvivalTH.datatibbletidyrtidyselecttimeregtinytexutf8vctrsviridisviridisLitewithrxfunyamlzoo

Topological Analysis

Rendered fromtopological-analysis.Rmdusingknitr::rmarkdownon Apr 02 2025.

Last update: 2024-01-31
Started: 2020-06-19